PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001554G0080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 421aa    MW: 45700.9 Da    PI: 10.3107
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001554G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.61.1e-29261572102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.................... CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.................... 74 
                      Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y     +   + +                      
  PH01001554G0080  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYVSAAFTCVAGVRVFlefamdgwmdswvltacagg 119
                      9********************6667***********************************76666666655333678999******99999999 PP

                      ........X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 ........k..ekiweFkhksFkkgkkellekikrkks 102
                              k  ++ weF+++ F+kg+k+ll++i+r+k 
  PH01001554G0080 120 nvvmqgfrKvvPERWEFANEFFRKGEKQLLCEIHRRKM 157
                      888877661669***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-321585IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-4222155IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.81E-252393IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2626155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-142649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-146577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-147890IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.81E-25123155IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-32125150IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MERCGSWSEC DSAAQAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYVSAAF TCVAGVRVFL EFAMDGWMDS WVLTACAGGN  120
VVMQGFRKVV PERWEFANEF FRKGEKQLLC EIHRRKMTSV SPASPSPSPF FAPPHFALFH  180
PGMAAAQHHQ YVGDDGLVAA HGMGVPFPQP HWREPHAPVA TRLLALAGPV PTPAAEGGGG  240
GRAATAAVLV EENERLRRSN TALLQELAHM RKLYNDIIYF VQNHVRPMAA SPATAAFLQG  300
LGLQARKKPV AANGLNNSGG STTSSSSLTI AEEPSPPPQQ IAADKSGGGR QQQRRSVGAD  360
QALRRAHKRG PVRRGQEEAA FGRRAAAHVA CHQASPCARE RRPKPNHRAV VAAARRLVSS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-152216117125Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.11e-140PREDICTED: heat stress transcription factor B-4c
SwissprotQ67U941e-142HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0M1Z41e-150A0A0E0M1Z4_ORYPU; Uncharacterized protein
STRINGLOC_Os09g28200.11e-140(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-69heat shock transcription factor B4